AltamISA
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Installation & Getting Started
Installation
Getting Started
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API Reference
Parsers
Writers
Validators
Models
Constants
Headers
Exceptions
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Contributing
Credits
History
License
AltamISA
Index
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Index
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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R
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W
A
accession (altamisa.isatab.OntologyTermRef attribute)
address (altamisa.isatab.ContactInfo attribute)
AdvisoryIsaValidationWarning
affiliation (altamisa.isatab.ContactInfo attribute)
allowed_headers (altamisa.isatab.headers.AssayHeaderParser attribute)
(altamisa.isatab.headers.HeaderParserBase attribute)
(altamisa.isatab.headers.StudyHeaderParser attribute)
altamisa.constants.investigation_headers
module
altamisa.constants.table_headers
module
altamisa.constants.table_restrictions
module
altamisa.constants.table_tokens
module
altamisa.exceptions
module
altamisa.isatab.headers
module
AnnotatedStr (class in altamisa.isatab)
Arc (class in altamisa.isatab)
arcs (altamisa.isatab.Assay attribute)
(altamisa.isatab.Study attribute)
ARRAY_DATA_FILE (in module altamisa.constants.table_headers)
ARRAY_DATA_MATRIX_FILE (in module altamisa.constants.table_headers)
ARRAY_DESIGN_FILE (in module altamisa.constants.table_headers)
array_design_ref (altamisa.isatab.Process attribute)
ARRAY_DESIGN_REF (in module altamisa.constants.table_headers)
ArrayDataFileHeader (class in altamisa.isatab.headers)
ArrayDataMatrixFileHeader (class in altamisa.isatab.headers)
ArrayDesignFileHeader (class in altamisa.isatab.headers)
ArrayDesignRefHeader (class in altamisa.isatab.headers)
Assay (class in altamisa.isatab)
ASSAY_NAME (in module altamisa.constants.table_headers)
AssayHeaderParser (class in altamisa.isatab.headers)
AssayInfo (class in altamisa.isatab)
AssayNameHeader (class in altamisa.isatab.headers)
AssayReader (class in altamisa.isatab)
AssayRowReader (class in altamisa.isatab)
assays (altamisa.isatab.StudyInfo attribute)
AssayValidator (class in altamisa.isatab)
AssayWriter (class in altamisa.isatab)
authors (altamisa.isatab.PublicationInfo attribute)
B
BasicInfo (class in altamisa.isatab)
C
characteristics (altamisa.isatab.Material attribute)
Characteristics (class in altamisa.isatab)
CHARACTERISTICS (in module altamisa.constants.table_headers)
CharacteristicsHeader (class in altamisa.isatab.headers)
col_no (altamisa.isatab.headers.ColumnHeader attribute)
column_type (altamisa.isatab.headers.ArrayDataFileHeader attribute)
(altamisa.isatab.headers.ArrayDataMatrixFileHeader attribute)
(altamisa.isatab.headers.ArrayDesignFileHeader attribute)
(altamisa.isatab.headers.ArrayDesignRefHeader attribute)
(altamisa.isatab.headers.AssayNameHeader attribute)
(altamisa.isatab.headers.CharacteristicsHeader attribute)
(altamisa.isatab.headers.ColumnHeader attribute)
(altamisa.isatab.headers.CommentHeader attribute)
(altamisa.isatab.headers.DataTransformationNameHeader attribute)
(altamisa.isatab.headers.DateHeader attribute)
(altamisa.isatab.headers.DerivedArrayDataFileHeader attribute)
(altamisa.isatab.headers.DerivedArrayDataMatrixFileHeader attribute)
(altamisa.isatab.headers.DerivedDataFileHeader attribute)
(altamisa.isatab.headers.DerivedSpectralDataFileHeader attribute)
(altamisa.isatab.headers.ExtractHeader attribute)
(altamisa.isatab.headers.FactorValueHeader attribute)
(altamisa.isatab.headers.FirstDimensionHeader attribute)
(altamisa.isatab.headers.GelElectrophoresisAssayNameHeader attribute)
(altamisa.isatab.headers.HybridizationAssayNameHeader attribute)
(altamisa.isatab.headers.ImageFileHeader attribute)
(altamisa.isatab.headers.LabeledColumnHeader attribute)
(altamisa.isatab.headers.LabeledExtractHeader attribute)
(altamisa.isatab.headers.LabelHeader attribute)
(altamisa.isatab.headers.LibraryHeader attribute)
(altamisa.isatab.headers.MaterialTypeHeader attribute)
(altamisa.isatab.headers.MetaboliteAssignmentFileHeader attribute)
(altamisa.isatab.headers.MsAssayNameHeader attribute)
(altamisa.isatab.headers.NormalizationNameHeader attribute)
(altamisa.isatab.headers.ParameterValueHeader attribute)
(altamisa.isatab.headers.PeptideAssignmentFileHeader attribute)
(altamisa.isatab.headers.PerformerHeader attribute)
(altamisa.isatab.headers.PostTranslationalModificationAssignmentFileHeader attribute)
(altamisa.isatab.headers.ProteinAssignmentFileHeader attribute)
(altamisa.isatab.headers.ProtocolRefHeader attribute)
(altamisa.isatab.headers.RawDataFileHeader attribute)
(altamisa.isatab.headers.RawSpectralDataFileHeader attribute)
(altamisa.isatab.headers.SampleHeader attribute)
(altamisa.isatab.headers.ScanNameHeader attribute)
(altamisa.isatab.headers.SecondDimensionHeader attribute)
(altamisa.isatab.headers.SimpleColumnHeader attribute)
(altamisa.isatab.headers.SourceHeader attribute)
(altamisa.isatab.headers.SpotPickingFileHeader attribute)
(altamisa.isatab.headers.UnitHeader attribute)
ColumnHeader (class in altamisa.isatab.headers)
Comment (class in altamisa.isatab)
COMMENT (in module altamisa.constants.table_headers)
CommentHeader (class in altamisa.isatab.headers)
comments (altamisa.isatab.AssayInfo attribute)
(altamisa.isatab.BasicInfo attribute)
(altamisa.isatab.ContactInfo attribute)
(altamisa.isatab.DesignDescriptorsInfo attribute)
(altamisa.isatab.FactorInfo attribute)
(altamisa.isatab.Material attribute)
(altamisa.isatab.OntologyRef attribute)
(altamisa.isatab.Process attribute)
(altamisa.isatab.ProtocolInfo attribute)
(altamisa.isatab.PublicationInfo attribute)
components (altamisa.isatab.ProtocolInfo attribute)
ContactInfo (class in altamisa.isatab)
contacts (altamisa.isatab.InvestigationInfo attribute)
(altamisa.isatab.StudyInfo attribute)
CriticalIsaValidationWarning
D
DATA_FILE_HEADERS (in module altamisa.constants.table_headers)
DATA_TRANSFORMATION_NAME (in module altamisa.constants.table_headers)
DataTransformationNameHeader (class in altamisa.isatab.headers)
date (altamisa.isatab.Process attribute)
DATE (in module altamisa.constants.table_headers)
DateHeader (class in altamisa.isatab.headers)
DERIVED_ARRAY_DATA_FILE (in module altamisa.constants.table_headers)
DERIVED_ARRAY_DATA_MATRIX_FILE (in module altamisa.constants.table_headers)
DERIVED_DATA_FILE (in module altamisa.constants.table_headers)
DERIVED_SPECTRAL_DATA_FILE (in module altamisa.constants.table_headers)
DerivedArrayDataFileHeader (class in altamisa.isatab.headers)
DerivedArrayDataMatrixFileHeader (class in altamisa.isatab.headers)
DerivedDataFileHeader (class in altamisa.isatab.headers)
DerivedSpectralDataFileHeader (class in altamisa.isatab.headers)
description (altamisa.isatab.BasicInfo attribute)
(altamisa.isatab.OntologyRef attribute)
(altamisa.isatab.ProtocolInfo attribute)
DesignDescriptorsInfo (class in altamisa.isatab)
designs (altamisa.isatab.StudyInfo attribute)
DNA_MICROARRAY (in module altamisa.constants.table_restrictions)
doi (altamisa.isatab.PublicationInfo attribute)
E
email (altamisa.isatab.ContactInfo attribute)
extract_label (altamisa.isatab.Material attribute)
EXTRACT_NAME (in module altamisa.constants.table_headers)
ExtractHeader (class in altamisa.isatab.headers)
F
FACTOR_VALUE (in module altamisa.constants.table_headers)
factor_values (altamisa.isatab.Material attribute)
FactorInfo (class in altamisa.isatab)
factors (altamisa.isatab.StudyInfo attribute)
FactorValue (class in altamisa.isatab)
FactorValueHeader (class in altamisa.isatab.headers)
fax (altamisa.isatab.ContactInfo attribute)
file (altamisa.isatab.Assay attribute)
(altamisa.isatab.OntologyRef attribute)
(altamisa.isatab.Study attribute)
first_dimension (altamisa.isatab.Process attribute)
FIRST_DIMENSION (in module altamisa.constants.table_headers)
first_name (altamisa.isatab.ContactInfo attribute)
FirstDimensionHeader (class in altamisa.isatab.headers)
from_stream() (altamisa.isatab.AssayReader class method)
(altamisa.isatab.AssayRowReader class method)
(altamisa.isatab.InvestigationReader class method)
(altamisa.isatab.InvestigationWriter class method)
(altamisa.isatab.StudyReader class method)
(altamisa.isatab.StudyRowReader class method)
G
GEL_ELECTROPHORESIS (in module altamisa.constants.table_restrictions)
GEL_ELECTROPHORESIS_ASSAY_NAME (in module altamisa.constants.table_headers)
GelElectrophoresisAssayNameHeader (class in altamisa.isatab.headers)
get_simple_string() (altamisa.isatab.headers.ColumnHeader method)
(altamisa.isatab.headers.LabeledColumnHeader method)
(altamisa.isatab.headers.TermRefAnnotationHeader method)
H
head (altamisa.isatab.Arc attribute)
header (altamisa.isatab.Assay attribute)
(altamisa.isatab.Study attribute)
HeaderParserBase (class in altamisa.isatab.headers)
headers (altamisa.isatab.AssayInfo attribute)
(altamisa.isatab.BasicInfo attribute)
(altamisa.isatab.ContactInfo attribute)
(altamisa.isatab.DesignDescriptorsInfo attribute)
(altamisa.isatab.FactorInfo attribute)
(altamisa.isatab.Material attribute)
(altamisa.isatab.OntologyRef attribute)
(altamisa.isatab.Process attribute)
(altamisa.isatab.ProtocolInfo attribute)
(altamisa.isatab.PublicationInfo attribute)
HYBRIDIZATION_ASSAY_NAME (in module altamisa.constants.table_headers)
HybridizationAssayNameHeader (class in altamisa.isatab.headers)
I
identifier (altamisa.isatab.BasicInfo attribute)
IMAGE_FILE (in module altamisa.constants.table_headers)
ImageFileHeader (class in altamisa.isatab.headers)
info (altamisa.isatab.InvestigationInfo attribute)
(altamisa.isatab.StudyInfo attribute)
INVESTIGATION (in module altamisa.constants.investigation_headers)
INVESTIGATION_CONTACTS (in module altamisa.constants.investigation_headers)
INVESTIGATION_CONTACTS_KEYS (in module altamisa.constants.investigation_headers)
INVESTIGATION_DESCRIPTION (in module altamisa.constants.investigation_headers)
INVESTIGATION_IDENTIFIER (in module altamisa.constants.investigation_headers)
INVESTIGATION_INFO_KEYS (in module altamisa.constants.investigation_headers)
INVESTIGATION_PERSON_ADDRESS (in module altamisa.constants.investigation_headers)
INVESTIGATION_PERSON_AFFILIATION (in module altamisa.constants.investigation_headers)
INVESTIGATION_PERSON_EMAIL (in module altamisa.constants.investigation_headers)
INVESTIGATION_PERSON_FAX (in module altamisa.constants.investigation_headers)
INVESTIGATION_PERSON_FIRST_NAME (in module altamisa.constants.investigation_headers)
INVESTIGATION_PERSON_LAST_NAME (in module altamisa.constants.investigation_headers)
INVESTIGATION_PERSON_MID_INITIALS (in module altamisa.constants.investigation_headers)
INVESTIGATION_PERSON_PHONE (in module altamisa.constants.investigation_headers)
INVESTIGATION_PERSON_ROLES (in module altamisa.constants.investigation_headers)
INVESTIGATION_PERSON_ROLES_TERM_SOURCE_REF (in module altamisa.constants.investigation_headers)
INVESTIGATION_PUBLIC_RELEASE_DATE (in module altamisa.constants.investigation_headers)
INVESTIGATION_PUBLICATION_AUTHOR_LIST (in module altamisa.constants.investigation_headers)
INVESTIGATION_PUBLICATION_DOI (in module altamisa.constants.investigation_headers)
INVESTIGATION_PUBLICATION_STATUS (in module altamisa.constants.investigation_headers)
INVESTIGATION_PUBLICATION_TITLE (in module altamisa.constants.investigation_headers)
INVESTIGATION_PUBLICATIONS (in module altamisa.constants.investigation_headers)
INVESTIGATION_PUBLICATIONS_KEYS (in module altamisa.constants.investigation_headers)
INVESTIGATION_PUBMED_ID (in module altamisa.constants.investigation_headers)
INVESTIGATION_SUBMISSION_DATE (in module altamisa.constants.investigation_headers)
INVESTIGATION_TITLE (in module altamisa.constants.investigation_headers)
InvestigationInfo (class in altamisa.isatab)
InvestigationReader (class in altamisa.isatab)
InvestigationValidator (class in altamisa.isatab)
InvestigationWriter (class in altamisa.isatab)
IsaException
IsaValidationWarning
IsaWarning
L
LABEL (in module altamisa.constants.table_headers)
LABELED_EXTRACT_NAME (in module altamisa.constants.table_headers)
labeled_headers (altamisa.isatab.headers.HeaderParserBase attribute)
LabeledColumnHeader (class in altamisa.isatab.headers)
LabeledExtractHeader (class in altamisa.isatab.headers)
LabelHeader (class in altamisa.isatab.headers)
last_name (altamisa.isatab.ContactInfo attribute)
LIBRARY_NAME (in module altamisa.constants.table_headers)
LibraryHeader (class in altamisa.isatab.headers)
M
MASS_SPECTROMETRY (in module altamisa.constants.table_restrictions)
Material (class in altamisa.isatab)
MATERIAL_NAME_HEADERS (in module altamisa.constants.table_headers)
material_type (altamisa.isatab.Material attribute)
MATERIAL_TYPE (in module altamisa.constants.table_headers)
materials (altamisa.isatab.Assay attribute)
(altamisa.isatab.Study attribute)
MaterialTypeHeader (class in altamisa.isatab.headers)
measurement_type (altamisa.isatab.AssayInfo attribute)
METABOLITE_ASSIGNMENT_FILE (in module altamisa.constants.table_headers)
METABOLITE_PROFILING (in module altamisa.constants.table_restrictions)
MetaboliteAssignmentFileHeader (class in altamisa.isatab.headers)
mid_initial (altamisa.isatab.ContactInfo attribute)
ModerateIsaValidationWarning
module
altamisa.constants.investigation_headers
altamisa.constants.table_headers
altamisa.constants.table_restrictions
altamisa.constants.table_tokens
altamisa.exceptions
altamisa.isatab.headers
MS_ASSAY_NAME (in module altamisa.constants.table_headers)
MsAssayNameHeader (class in altamisa.isatab.headers)
N
name (altamisa.isatab.Characteristics attribute)
(altamisa.isatab.Comment attribute)
(altamisa.isatab.FactorInfo attribute)
(altamisa.isatab.FactorValue attribute)
(altamisa.isatab.Material attribute)
(altamisa.isatab.OntologyRef attribute)
(altamisa.isatab.OntologyTermRef attribute)
(altamisa.isatab.ParameterValue attribute)
(altamisa.isatab.Process attribute)
(altamisa.isatab.ProtocolComponentInfo attribute)
(altamisa.isatab.ProtocolInfo attribute)
name_type (altamisa.isatab.Process attribute)
NORMALIZATION_NAME (in module altamisa.constants.table_headers)
NormalizationNameHeader (class in altamisa.isatab.headers)
NUCLEOTIDE_SEQUENCING (in module altamisa.constants.table_restrictions)
O
ontology_name (altamisa.isatab.OntologyTermRef attribute)
ONTOLOGY_SOURCE_REF_KEYS (in module altamisa.constants.investigation_headers)
ONTOLOGY_SOURCE_REFERENCE (in module altamisa.constants.investigation_headers)
ontology_source_refs (altamisa.isatab.InvestigationInfo attribute)
OntologyRef (class in altamisa.isatab)
OntologyTermRef (class in altamisa.isatab)
P
PARAMETER_VALUE (in module altamisa.constants.table_headers)
parameter_values (altamisa.isatab.Process attribute)
parameters (altamisa.isatab.ProtocolInfo attribute)
ParameterValue (class in altamisa.isatab)
ParameterValueHeader (class in altamisa.isatab.headers)
ParseIsatabException
ParseIsatabWarning
path (altamisa.isatab.AssayInfo attribute)
(altamisa.isatab.BasicInfo attribute)
PEPTIDE_ASSIGNMENT_FILE (in module altamisa.constants.table_headers)
PeptideAssignmentFileHeader (class in altamisa.isatab.headers)
performer (altamisa.isatab.Process attribute)
PERFORMER (in module altamisa.constants.table_headers)
PerformerHeader (class in altamisa.isatab.headers)
phone (altamisa.isatab.ContactInfo attribute)
platform (altamisa.isatab.AssayInfo attribute)
PostTranslationalModificationAssignmentFileHeader (class in altamisa.isatab.headers)
Process (class in altamisa.isatab)
PROCESS_NAME_HEADERS (in module altamisa.constants.table_headers)
processes (altamisa.isatab.Assay attribute)
(altamisa.isatab.Study attribute)
PROTEIN_ASSIGNMENT_FILE (in module altamisa.constants.table_headers)
PROTEIN_EXPRESSION_PROFILING (in module altamisa.constants.table_restrictions)
PROTEIN_IDENTIFICATION (in module altamisa.constants.table_restrictions)
PROTEIN_MICROARRAY (in module altamisa.constants.table_restrictions)
ProteinAssignmentFileHeader (class in altamisa.isatab.headers)
protocol_ref (altamisa.isatab.Process attribute)
PROTOCOL_REF (in module altamisa.constants.table_headers)
ProtocolComponentInfo (class in altamisa.isatab)
ProtocolInfo (class in altamisa.isatab)
ProtocolRefHeader (class in altamisa.isatab.headers)
protocols (altamisa.isatab.StudyInfo attribute)
PT_DATA_COLLECTION (in module altamisa.constants.table_restrictions)
PT_DATA_NORMALIZATION (in module altamisa.constants.table_restrictions)
PT_DATA_TRANSFORMATION (in module altamisa.constants.table_restrictions)
PT_ELECTROPHORESIS (in module altamisa.constants.table_restrictions)
PT_HYBRIDIZATION (in module altamisa.constants.table_restrictions)
PT_MASS_SPECTROMETRY (in module altamisa.constants.table_restrictions)
PT_NUCLEIC_ACID_HYBRIDIZATION (in module altamisa.constants.table_restrictions)
public_release_date (altamisa.isatab.BasicInfo attribute)
PublicationInfo (class in altamisa.isatab)
publications (altamisa.isatab.InvestigationInfo attribute)
(altamisa.isatab.StudyInfo attribute)
pubmed_id (altamisa.isatab.PublicationInfo attribute)
R
RAW_DATA_FILE (in module altamisa.constants.table_headers)
RAW_SPECTRAL_DATA_FILE (in module altamisa.constants.table_headers)
RawDataFileHeader (class in altamisa.isatab.headers)
RawSpectralDataFileHeader (class in altamisa.isatab.headers)
read() (altamisa.isatab.AssayReader method)
(altamisa.isatab.AssayRowReader method)
(altamisa.isatab.InvestigationReader method)
(altamisa.isatab.StudyReader method)
(altamisa.isatab.StudyRowReader method)
RESTRICTED_FILES_AMEAS (in module altamisa.constants.table_restrictions)
RESTRICTED_FILES_ATECH (in module altamisa.constants.table_restrictions)
RESTRICTED_MATERIALS_AMEAS (in module altamisa.constants.table_restrictions)
RESTRICTED_MATERIALS_ATECH (in module altamisa.constants.table_restrictions)
RESTRICTED_PROTO_ANNOS_ATECH (in module altamisa.constants.table_restrictions)
RESTRICTED_PROTO_ANNOS_PTYPE (in module altamisa.constants.table_restrictions)
RESTRICTED_PROTO_NAMES_ATECH (in module altamisa.constants.table_restrictions)
RESTRICTED_PROTO_NAMES_PTYPE (in module altamisa.constants.table_restrictions)
role (altamisa.isatab.ContactInfo attribute)
run() (altamisa.isatab.headers.HeaderParserBase method)
S
SAMPLE_NAME (in module altamisa.constants.table_headers)
SampleHeader (class in altamisa.isatab.headers)
SCAN_NAME (in module altamisa.constants.table_headers)
ScanNameHeader (class in altamisa.isatab.headers)
second_dimension (altamisa.isatab.Process attribute)
SECOND_DIMENSION (in module altamisa.constants.table_headers)
SecondDimensionHeader (class in altamisa.isatab.headers)
simple_headers (altamisa.isatab.headers.HeaderParserBase attribute)
SimpleColumnHeader (class in altamisa.isatab.headers)
SOURCE_NAME (in module altamisa.constants.table_headers)
SourceHeader (class in altamisa.isatab.headers)
span (altamisa.isatab.headers.ColumnHeader attribute)
SPOT_PICKING_FILE (in module altamisa.constants.table_headers)
SpotPickingFileHeader (class in altamisa.isatab.headers)
status (altamisa.isatab.PublicationInfo attribute)
studies (altamisa.isatab.InvestigationInfo attribute)
Study (class in altamisa.isatab)
STUDY (in module altamisa.constants.investigation_headers)
STUDY_ASSAY_FILE_NAME (in module altamisa.constants.investigation_headers)
STUDY_ASSAY_MEASUREMENT_TYPE (in module altamisa.constants.investigation_headers)
STUDY_ASSAY_MEASUREMENT_TYPE_TERM_SOURCE_REF (in module altamisa.constants.investigation_headers)
STUDY_ASSAY_TECHNOLOGY_PLATFORM (in module altamisa.constants.investigation_headers)
STUDY_ASSAY_TECHNOLOGY_TYPE (in module altamisa.constants.investigation_headers)
STUDY_ASSAY_TECHNOLOGY_TYPE_TERM_SOURCE_REF (in module altamisa.constants.investigation_headers)
STUDY_ASSAYS (in module altamisa.constants.investigation_headers)
STUDY_ASSAYS_KEYS (in module altamisa.constants.investigation_headers)
STUDY_CONTACTS (in module altamisa.constants.investigation_headers)
STUDY_CONTACTS_KEYS (in module altamisa.constants.investigation_headers)
STUDY_DESCRIPTION (in module altamisa.constants.investigation_headers)
STUDY_DESIGN_DESCR_KEYS (in module altamisa.constants.investigation_headers)
STUDY_DESIGN_DESCRIPTORS (in module altamisa.constants.investigation_headers)
STUDY_DESIGN_TYPE (in module altamisa.constants.investigation_headers)
STUDY_DESIGN_TYPE_TERM_ACCESSION_NUMBER (in module altamisa.constants.investigation_headers)
STUDY_DESIGN_TYPE_TERM_SOURCE_REF (in module altamisa.constants.investigation_headers)
STUDY_FACTOR_NAME (in module altamisa.constants.investigation_headers)
STUDY_FACTOR_TYPE (in module altamisa.constants.investigation_headers)
STUDY_FACTOR_TYPE_TERM_ACCESSION_NUMBER (in module altamisa.constants.investigation_headers)
STUDY_FACTOR_TYPE_TERM_SOURCE_REF (in module altamisa.constants.investigation_headers)
STUDY_FACTORS (in module altamisa.constants.investigation_headers)
STUDY_FACTORS_KEYS (in module altamisa.constants.investigation_headers)
STUDY_FILE_NAME (in module altamisa.constants.investigation_headers)
STUDY_IDENTIFIER (in module altamisa.constants.investigation_headers)
STUDY_INFO_KEYS (in module altamisa.constants.investigation_headers)
STUDY_PERSON_ADDRESS (in module altamisa.constants.investigation_headers)
STUDY_PERSON_AFFILIATION (in module altamisa.constants.investigation_headers)
STUDY_PERSON_EMAIL (in module altamisa.constants.investigation_headers)
STUDY_PERSON_FAX (in module altamisa.constants.investigation_headers)
STUDY_PERSON_FIRST_NAME (in module altamisa.constants.investigation_headers)
STUDY_PERSON_LAST_NAME (in module altamisa.constants.investigation_headers)
STUDY_PERSON_MID_INITIALS (in module altamisa.constants.investigation_headers)
STUDY_PERSON_PHONE (in module altamisa.constants.investigation_headers)
STUDY_PERSON_ROLES (in module altamisa.constants.investigation_headers)
STUDY_PERSON_ROLES_TERM_ACCESSION_NUMBER (in module altamisa.constants.investigation_headers)
STUDY_PERSON_ROLES_TERM_SOURCE_REF (in module altamisa.constants.investigation_headers)
STUDY_PROTOCOL_COMPONENTS_NAME (in module altamisa.constants.investigation_headers)
STUDY_PROTOCOL_COMPONENTS_TYPE (in module altamisa.constants.investigation_headers)
STUDY_PROTOCOL_DESCRIPTION (in module altamisa.constants.investigation_headers)
STUDY_PROTOCOL_NAME (in module altamisa.constants.investigation_headers)
STUDY_PROTOCOL_PARAMETERS_NAME (in module altamisa.constants.investigation_headers)
STUDY_PROTOCOL_TYPE (in module altamisa.constants.investigation_headers)
STUDY_PROTOCOL_TYPE_TERM_ACCESSION_NUMBER (in module altamisa.constants.investigation_headers)
STUDY_PROTOCOL_TYPE_TERM_SOURCE_REF (in module altamisa.constants.investigation_headers)
STUDY_PROTOCOL_URI (in module altamisa.constants.investigation_headers)
STUDY_PROTOCOL_VERSION (in module altamisa.constants.investigation_headers)
STUDY_PROTOCOLS (in module altamisa.constants.investigation_headers)
STUDY_PROTOCOLS_KEYS (in module altamisa.constants.investigation_headers)
STUDY_PUBLIC_RELEASE_DATE (in module altamisa.constants.investigation_headers)
STUDY_PUBLICATION_AUTHOR_LIST (in module altamisa.constants.investigation_headers)
STUDY_PUBLICATION_DOI (in module altamisa.constants.investigation_headers)
STUDY_PUBLICATION_STATUS (in module altamisa.constants.investigation_headers)
STUDY_PUBLICATION_STATUS_TERM_SOURCE_REF (in module altamisa.constants.investigation_headers)
STUDY_PUBLICATION_TITLE (in module altamisa.constants.investigation_headers)
STUDY_PUBLICATIONS (in module altamisa.constants.investigation_headers)
STUDY_PUBLICATIONS_KEYS (in module altamisa.constants.investigation_headers)
STUDY_PUBMED_ID (in module altamisa.constants.investigation_headers)
STUDY_SUBMISSION_DATE (in module altamisa.constants.investigation_headers)
STUDY_TITLE (in module altamisa.constants.investigation_headers)
StudyHeaderParser (class in altamisa.isatab.headers)
StudyInfo (class in altamisa.isatab)
StudyReader (class in altamisa.isatab)
StudyRowReader (class in altamisa.isatab)
StudyValidator (class in altamisa.isatab)
StudyWriter (class in altamisa.isatab)
submission_date (altamisa.isatab.BasicInfo attribute)
T
tail (altamisa.isatab.Arc attribute)
technology_type (altamisa.isatab.AssayInfo attribute)
TERM_ACCESSION_NUMBER (in module altamisa.constants.table_headers)
TERM_SOURCE_DESCRIPTION (in module altamisa.constants.investigation_headers)
TERM_SOURCE_FILE (in module altamisa.constants.investigation_headers)
TERM_SOURCE_NAME (in module altamisa.constants.investigation_headers)
TERM_SOURCE_REF (in module altamisa.constants.table_headers)
term_source_ref_header (altamisa.isatab.headers.ColumnHeader attribute)
TERM_SOURCE_VERSION (in module altamisa.constants.investigation_headers)
TermRefAnnotationHeader (class in altamisa.isatab.headers)
title (altamisa.isatab.BasicInfo attribute)
(altamisa.isatab.PublicationInfo attribute)
TOKEN_ANONYMOUS (in module altamisa.constants.table_tokens)
TOKEN_EMPTY (in module altamisa.constants.table_tokens)
TOKEN_UNKNOWN (in module altamisa.constants.table_tokens)
type (altamisa.isatab.DesignDescriptorsInfo attribute)
(altamisa.isatab.FactorInfo attribute)
(altamisa.isatab.Material attribute)
(altamisa.isatab.ProtocolComponentInfo attribute)
(altamisa.isatab.ProtocolInfo attribute)
U
unique_name (altamisa.isatab.Material attribute)
(altamisa.isatab.Process attribute)
unit (altamisa.isatab.Characteristics attribute)
(altamisa.isatab.FactorValue attribute)
(altamisa.isatab.ParameterValue attribute)
UNIT (in module altamisa.constants.table_headers)
unit_header (altamisa.isatab.headers.ColumnHeader attribute)
UnitHeader (class in altamisa.isatab.headers)
uri (altamisa.isatab.ProtocolInfo attribute)
V
validate() (altamisa.isatab.AssayValidator method)
(altamisa.isatab.InvestigationValidator method)
value (altamisa.isatab.Characteristics attribute)
(altamisa.isatab.Comment attribute)
(altamisa.isatab.FactorValue attribute)
(altamisa.isatab.ParameterValue attribute)
version (altamisa.isatab.OntologyRef attribute)
(altamisa.isatab.ProtocolInfo attribute)
W
write() (altamisa.isatab.InvestigationWriter method)
WriteIsatabException
WriteIsatabWarning
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